Protocol

• namespace: common
• slug: unchained-labs-lunatic-util
• version: v2.6.1
• changelog:
  • Update to use task script common/unchained-labs-lunatic-util:v6.0.1

Task Script

• namespace: common
• slug: unchained-labs-lunatic-util
• version: v6.0.1
• changelog:
  • Update xlsx parser in cases of unexpected format in Application

Protocol

• namespace: common
• slug: perkinelmer-envision-raw-to-ids
• version: v2.6.1
• changelog:

Task Script

• namespace: common
• slug: perkinelmer-envision-raw-to-ids
• version: v5.1.1
• changelog:
  • Update IDS filename to {index}.json format

Protocol

• namespace: common
• slug: akta-raw-to-ids
• version: v3.1.1
• changelog:
  • Update to use common/akta-raw-to-ids:v3.1.1 task script

Task Script

• namespace: common
• slug: akta-raw-to-ids
• version: v3.1.1
• changelog:
  • Revert naming convention of output to 0.json

IDS

• namespace: common
• slug: qpcr-thermofisher-viia7
• version: v4.0.0
• changelog:
  • Add property methods[*].targets
  • Add property results[*].target_name
  • Add property runs[*].bulb_usage
  • Add property runs[*].errors
  • Add multi-component datacube for each reporter found in the input files (not just hard-coded FAM or FOX)
  • Update root $id from https://ids.tetrascience.com/common/qpcr-thermofisher-viia7/v3.0.0/schema.json to https://ids.tetrascience.com/common/qpcr-thermofisher-viia7/v4.0.0/schema.json
  • Update @idsVersion const from v3.0.0 to v4.0.0
  • Update results[*] required from ['@link', 'cycle_threshold', 'name', 'omit'] to ['@link', 'cycle_threshold', 'name', 'omit', 'target_name']
  • Update samples[*] remove schema item "required": ["@link"]
  • Update samples[*].labels[*].source.name type from string to ['null', 'string']
  • Update datacubes to store amplification data per sample/target combination
  • Update Raw to IDS mapping table for raw files extracted directly from .eds files without the export software.
  • Remove property methods[*].baseline because baseline information was moved to methods[*].targets[*].baseline
  • Remove property methods[*].cycle_threshold_threshold because cycle threshold information was moved to methods[*].targets[*].cycle_threshold_threshold
  • Remove property samples[*].@link

Protocol

• namespace: common
• slug: thermofisher-viia7-eds-raw-to-ids
• version: v1.0.0
• changelog:
  • First release

Task Script

• namespace: common
• slug: thermofisher-viia7-eds-raw-to-ids
• version: v1.0.0
• changelog:
  • First release

IDS

• namespace: common
• slug: agilent-chemstation
• version: v2.0.0
• changelog:
  • Changed methods[0].detection.uv_vis_settings[*].peak_width from value-unit object to nullable string
  • Changed systems[0].component.column to array so multiple columns can be captured
  • Added methods[0].custom_fields to capture custom sample and compound fields under Custom_Fields in raw json
  • Added default value of null to users[0].id
  • Changed results[*].retention_time to nested time value-unit field (results[*].retention.time<value & unit>)

Task Script

• namespace: common
• slug: luminex-xponent-raw-to-ids
• version: v1.0.0
• changelog:
  • Created Initial Parser

Protocol

• namespace: common
• slug: luminex-xponent-raw-to-ids
• version: v1.0.0
• changelog:
  • initial release