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Product Documentation

2022.3_2 Artifact Release

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RELEASE DATE: 2022-03-23

Bug Fixes

DE-2911 qpcr-thermofisher-viia7 - update IDS to pass IDS validation using PIDS

  • IDS

    • namespace: common
    • slug: qpcr-thermofisher-viia7
    • version: v3.0.0
    • changelog:
      • Set additionalProperties false on all objects
      • value is now a required field in results[*].quantity
      • comments field has been moved to samples[*].labels[x]
      • samples[*].quantity.value field has been changed to required to match other similar objects
      • Update systems, users, samples, datacubes to pass IDS convention validation

  • Protocol

    • namespace: common
    • slug: thermofisher-viia7-raw-to-ids
    • version: v2.1.0
    • changelog:
      • Update to use task script common/thermofisher-viia7-raw-to-ids:v3.0.0

  • Task Script

    • namespace: common
    • slug: thermofisher-viia7-raw-to-ids
    • version: v3.0.0
    • changelog:
      • Update to use IDS common/qpcr-thermofisher-viia7:v3.0.0
DE-3430 Update FCS Parser to remove `Time` requirement

  • Protocol

    • namespace: common
    • slug: bd-flow-cytometers-raw-to-ids
    • version: v1.1.2
    • changelog:
      • Update to use task script common/fcs-raw-to-ids/v1.1.3

  • Protocol

    • namespace: common
    • slug: fcs-raw-to-ids
    • version: v1.1.3
    • changelog:
      • Update to use task script common/fcs-raw-to-ids/v1.1.3

  • Protocol

    • namespace: common
    • slug: intellicyt-ique-screener-plus-raw-to-ids
    • version: v1.1.1
    • changelog:
      • Update to use task script common/fcs-raw-to-ids/v1.1.3

  • Protocol

    • namespace: common
    • slug: sony-sh800-facs-raw-to-ids
    • version: v1.1.1
    • changelog:
      • Update to use task script common/fcs-raw-to-ids/v1.1.3

  • Protocol

    • namespace: common
    • slug: thermofisher-attune-nxt-raw-to-ids
    • version: v1.0.1
    • changelog:
      • Update to use task script common/fcs-raw-to-ids/v1.1.3

  • Task Script

    • namespace: common
    • slug: fcs-raw-to-ids
    • version: v1.1.3
    • changelog:
      • time can now be arbitrary, beginning at 1 with time step 1
      • Added support for use of demographics metadata (e.g., case number, patient id, etc.) from BD FACSCanto clinical software

Enhancements (New Features and Functionality)

DE-2433 Tecan Sunrise task script convention update

  • IDS

    • namespace: common
    • slug: plate-reader-tecan-sunrise
    • version: v3.0.0
    • changelog:
      • Update according to TS IDS conventions
        • Make @idsConventionVersion required
        • Update string type fields to use nullable_string definition
        • Update number type fields to use nullable_number definition
        • Update boolean type fields to use nullable_boolean definition
        • Update samples to have the full placeholder fields defined in the convention

  • Protocol

    • namespace: common
    • slug: tecan-sunrise-raw-to-ids
    • version: v2.1.0
    • changelog:
      • Update to use task script common/tecan-sunrise-raw-to-ids:v3.0.0
      • Add pipeline configuration IDS File Category for users to set IDS JSON file category

  • Task Script

    • namespace: common
    • slug: tecan-sunrise-raw-to-ids
    • version: v3.0.0
    • changelog:
      • Update to use IDS common/plate-reader-tecan-sunrise:v3.0.0
      • Add IDS JSON file category configuration support
DE-3311 Beckman Coulter, Vi-Cell BLU - Create RAW to IDS parser

  • Protocol

    • namespace: common
    • slug: beckmancoulter-vicell-blu-raw-to-ids
    • version: v1.0.0
    • changelog:
      • First release

  • Task Script

    • namespace: common
    • slug: beckmancoulter-vicell-blu-raw-to-ids
    • version: v1.0.0
    • changelog:
      • First release
DE-3397 Lab X update IDS

  • IDS

    • namespace: common
    • slug: mettler-toledo-labx
    • version: v4.0.0
    • changelog:
      • Update methods[*].metadata.scopes[*].method_parameters[*] to include decimal_places, decimal field in schema.json
      • Updated the IDS to follow the standard IDS convention

Updated 6 months ago