Protocol

• namespace: common
• slug: biotek-gen5-raw-json-to-ids
• version: v1.2.0
• changelog:
  • Update protocol use task script common/biotek-gen5-raw-json-to-ids:v3.0.0

Task Script

• namespace: common
• slug: biotek-gen5-raw-json-to-ids
• version: v3.0.0
• changelog:
  • Update parser to output common/plate-reader-biotek-gen5:v4.0.0 IDS
  • Update protocol parsing to read protocol information from measurement Datasets
  • Update parser to support protocols that include kinetic steps
  • Update datacube parsing to use fixed linear well indexing for its dimension, e.g. for a 96 well plate A1 -> 1, B1 -> 13, H12 -> 96
  • Update datacube parsing to ensure every measure is of equal length
  • Update datacube parsing to skip empty datacubes
  • Update sample parsing to parse samples when no plate layout definition is included with the protocol
  • Rename IDS output file to 0.json

IDS

• namespace: common
• slug: plate-reader-biotek-gen5
• version: v4.0.0
• changelog:
  • Summary of changes:
    • Change method section to contain a field protocol to collect measurement protocol data
    • Add support for luminescence measurement mode
    • Add support for kinetic and spectral scan method information for absorbance, fluorescence and luminescence measurement modes
    • Add support for multi-step protocols including shaking, dispensing, temperature, delay and carrier movement steps
    • Add support for absorbance measurement mode path length correction data
  • Detailed changes:
    • Add datacubes[*].holder_barcode
    • Add methods[*].imaging.channels[*].gain
    • Add methods[*].options
    • Add methods[*].options.discontinuous_kinetics
    • Add methods[*].options.eject_on_completion
    • Add methods[*].options.read_plate_barcode
    • Add methods[*].options.skip_load_plate_dialog
    • Add methods[*].options.use_slower_carrier_speed
    • Add methods[*].protocol
    • Add methods[*].protocol[*]
    • Add methods[*].protocol[*].carrier
    • Add methods[*].protocol[*].carrier.comment
    • Add methods[*].protocol[*].carrier.operation
    • Add methods[*].protocol[*].delay
    • Add methods[*].protocol[*].delay.duration
    • Add methods[*].protocol[*].delay.duration.unit
    • Add methods[*].protocol[*].delay.duration.value
    • Add methods[*].protocol[*].delay.reference_time
    • Add methods[*].protocol[*].dispense
    • Add methods[*].protocol[*].dispense.aligned_dispense
    • Add methods[*].protocol[*].dispense.index
    • Add methods[*].protocol[*].dispense.priming
    • Add methods[*].protocol[*].dispense.priming.mode
    • Add methods[*].protocol[*].dispense.priming.volume
    • Add methods[*].protocol[*].dispense.priming.volume.unit
    • Add methods[*].protocol[*].dispense.priming.volume.value
    • Add methods[*].protocol[*].dispense.rate
    • Add methods[*].protocol[*].dispense.rate.unit
    • Add methods[*].protocol[*].dispense.rate.value
    • Add methods[*].protocol[*].dispense.volume
    • Add methods[*].protocol[*].dispense.volume.unit
    • Add methods[*].protocol[*].dispense.volume.value
    • Add methods[*].protocol[*].dispense.wells
    • Add methods[*].protocol[*].kinetic
    • Add methods[*].protocol[*].kinetic.interval
    • Add methods[*].protocol[*].kinetic.interval.unit
    • Add methods[*].protocol[*].kinetic.interval.value
    • Add methods[*].protocol[*].kinetic.runtime
    • Add methods[*].protocol[*].kinetic.runtime.unit
    • Add methods[*].protocol[*].kinetic.runtime.value
    • Add methods[*].protocol[*].kinetic.sub_protocol
    • Add methods[*].protocol[*].kinetic.sub_protocol[*]
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].carrier
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].carrier.comment
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].carrier.operation
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].delay
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].delay.duration
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].delay.duration.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].delay.duration.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].delay.reference_time
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.aligned_dispense
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.index
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming.mode
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming.volume
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming.volume.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming.volume.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.rate
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.rate.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.rate.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.volume
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.volume.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.volume.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].dispense.wells
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.calibrate_before_read
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.index
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.method
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.wavelength
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.wavelength.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.wavelength.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.calibrate_before_read
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.start
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.start.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.start.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.step
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.step.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.step.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.stop
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.stop.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.stop.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.delay
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.delay.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.delay.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.detection_type
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.position
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.raw_value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.position
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.raw_value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain.mode
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain.raw_value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain.wells
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.index
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.optics
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.fluorescence_polarization
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.light_source
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.light_source.energy
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.light_source.range
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.light_source.type
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.measurements_per_datapoint
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.mirror
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.collection_time
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.collection_time.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.collection_time.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.delay
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.delay.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.delay.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.top_probe_offset
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.top_probe_offset.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.top_probe_offset.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.position
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.raw_value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.wavelength
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.wavelength.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.wavelength.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.fluorescence_polarization
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.light_source
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.light_source.energy
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.light_source.range
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.light_source.type
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.start
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.start.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.start.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.step
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.step.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.step.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.stop
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.stop.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.stop.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.dynamic_range
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.emission
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain.mode
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain.raw_value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain.wells
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.integration_time
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.integration_time.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.integration_time.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.mirror
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.optics
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.top_probe_offset
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.top_probe_offset.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.top_probe_offset.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain.mode
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain.raw_value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain.wells
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.integration_time
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.integration_time.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.integration_time.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.start
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.start.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.start.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.step
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.step.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.step.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.stop
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.stop.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.stop.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.measurements_per_data_point
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.speed
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.type
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.label
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].read.wells
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake.displacement
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake.displacement.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake.displacement.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake.duration
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake.duration.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake.duration.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake.mode
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].shake.orbital_speed
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature.incubate
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature.preheat
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_gradient
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_gradient.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_gradient.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_temperature
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_temperature.unit
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_temperature.value
    • Add methods[*].protocol[*].kinetic.sub_protocol[*].type
    • Add methods[*].protocol[*].read
    • Add methods[*].protocol[*].read.absorbance
    • Add methods[*].protocol[*].read.absorbance.endpoint
    • Add methods[*].protocol[*].read.absorbance.endpoint.calibrate_before_read
    • Add methods[*].protocol[*].read.absorbance.endpoint.index
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.method
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength.unit
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength.value
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength.unit
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength.value
    • Add methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.value
    • Add methods[*].protocol[*].read.absorbance.endpoint.wavelength
    • Add methods[*].protocol[*].read.absorbance.endpoint.wavelength.unit
    • Add methods[*].protocol[*].read.absorbance.endpoint.wavelength.value
    • Add methods[*].protocol[*].read.absorbance.spectral_scan
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.calibrate_before_read
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.start
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.start.unit
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.start.value
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.step
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.step.unit
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.step.value
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.stop
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.stop.unit
    • Add methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.stop.value
    • Add methods[*].protocol[*].read.delay
    • Add methods[*].protocol[*].read.delay.unit
    • Add methods[*].protocol[*].read.delay.value
    • Add methods[*].protocol[*].read.detection_type
    • Add methods[*].protocol[*].read.fluorescence
    • Add methods[*].protocol[*].read.fluorescence.endpoint
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth.unit
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth.value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.position
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.raw_value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength.unit
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength.value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth.unit
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth.value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.position
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.raw_value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength.unit
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength.value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain.mode
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain.raw_value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain.value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain.wells
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.index
    • Add methods[*].protocol[*].read.fluorescence.endpoint.filter_set.optics
    • Add methods[*].protocol[*].read.fluorescence.endpoint.fluorescence_polarization
    • Add methods[*].protocol[*].read.fluorescence.endpoint.light_source
    • Add methods[*].protocol[*].read.fluorescence.endpoint.light_source.energy
    • Add methods[*].protocol[*].read.fluorescence.endpoint.light_source.range
    • Add methods[*].protocol[*].read.fluorescence.endpoint.light_source.type
    • Add methods[*].protocol[*].read.fluorescence.endpoint.measurements_per_data_point
    • Add methods[*].protocol[*].read.fluorescence.endpoint.mirror
    • Add methods[*].protocol[*].read.fluorescence.endpoint.time_resolved
    • Add methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.collection_time
    • Add methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.collection_time.unit
    • Add methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.collection_time.value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.delay
    • Add methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.delay.unit
    • Add methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.delay.value
    • Add methods[*].protocol[*].read.fluorescence.endpoint.top_probe_offset
    • Add methods[*].protocol[*].read.fluorescence.endpoint.top_probe_offset.unit
    • Add methods[*].protocol[*].read.fluorescence.endpoint.top_probe_offset.value
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth.unit
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth.value
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.position
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.raw_value
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.wavelength
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.wavelength.unit
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.wavelength.value
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.fluorescence_polarization
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.light_source
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.light_source.energy
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.light_source.range
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.light_source.type
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.start
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.start.unit
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.start.value
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.step
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.step.unit
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.step.value
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.stop
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.stop.unit
    • Add methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.stop.value
    • Add methods[*].protocol[*].read.luminescence
    • Add methods[*].protocol[*].read.luminescence.endpoint
    • Add methods[*].protocol[*].read.luminescence.endpoint.dynamic_range
    • Add methods[*].protocol[*].read.luminescence.endpoint.emission
    • Add methods[*].protocol[*].read.luminescence.endpoint.gain
    • Add methods[*].protocol[*].read.luminescence.endpoint.gain.mode
    • Add methods[*].protocol[*].read.luminescence.endpoint.gain.raw_value
    • Add methods[*].protocol[*].read.luminescence.endpoint.gain.value
    • Add methods[*].protocol[*].read.luminescence.endpoint.gain.wells
    • Add methods[*].protocol[*].read.luminescence.endpoint.integration_time
    • Add methods[*].protocol[*].read.luminescence.endpoint.integration_time.unit
    • Add methods[*].protocol[*].read.luminescence.endpoint.integration_time.value
    • Add methods[*].protocol[*].read.luminescence.endpoint.mirror
    • Add methods[*].protocol[*].read.luminescence.endpoint.optics
    • Add methods[*].protocol[*].read.luminescence.endpoint.top_probe_offset
    • Add methods[*].protocol[*].read.luminescence.endpoint.top_probe_offset.unit
    • Add methods[*].protocol[*].read.luminescence.endpoint.top_probe_offset.value
    • Add methods[*].protocol[*].read.luminescence.spectral_scan
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.gain
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.gain.mode
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.gain.raw_value
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.gain.value
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.gain.wells
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.integration_time
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.integration_time.unit
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.integration_time.value
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.start
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.start.unit
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.start.value
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.step
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.step.unit
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.step.value
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.stop
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.stop.unit
    • Add methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.stop.value
    • Add methods[*].protocol[*].read.measurements_per_datapoint
    • Add methods[*].protocol[*].read.speed
    • Add methods[*].protocol[*].read.type
    • Add methods[*].protocol[*].read.label
    • Add methods[*].protocol[*].read.wells
    • Add methods[*].protocol[*].shake
    • Add methods[*].protocol[*].shake.displacement
    • Add methods[*].protocol[*].shake.displacement.unit
    • Add methods[*].protocol[*].shake.displacement.value
    • Add methods[*].protocol[*].shake.duration
    • Add methods[*].protocol[*].shake.duration.unit
    • Add methods[*].protocol[*].shake.duration.value
    • Add methods[*].protocol[*].shake.mode
    • Add methods[*].protocol[*].shake.orbital_speed
    • Add methods[*].protocol[*].temperature
    • Add methods[*].protocol[*].temperature.incubate
    • Add methods[*].protocol[*].temperature.preheat
    • Add methods[*].protocol[*].temperature.set_gradient
    • Add methods[*].protocol[*].temperature.set_gradient.unit
    • Add methods[*].protocol[*].temperature.set_gradient.value
    • Add methods[*].protocol[*].temperature.set_temperature
    • Add methods[*].protocol[*].temperature.set_temperature.unit
    • Add methods[*].protocol[*].temperature.set_temperature.value
    • Add methods[*].protocol[*].type
    • Add methods[*].well_selection
    • Add runs[*].holder_barcode
    • Add runs[*].time.raw_acquired
    • Add samples[*].labels[*].time.raw
    • Add samples[*].labels[*].time.raw.lookup
    • Add samples[*].properties[*].time.raw
    • Add samples[*].properties[*].time.raw.lookup
    • Add systems[*].firmware[*].time
    • Add systems[*].firmware[*].time.last_updated
    • Add systems[*].firmware[*].time.raw_last_updated
    • Add systems[*].software[*].time
    • Add systems[*].software[*].time.last_updated
    • Add systems[*].software[*].time.raw_last_updated
    • Update root schema: modify $id from "https://ids.tetrascience.com/common/plate-reader-biotek-gen5/v3.0.0/schema.json" to "http://ids.tetrascience.com/common/plate-reader-biotek-gen5/v4.0.0/schema.json"
    • Update root schema: modify required from ["@idsConventionVersion", "@idsNamespace", "@idsType", "@idsVersion", "systems"] to ["@idsNamespace", "@idsType", "@idsVersion"]
    • Update @idsType schema: modify const from "plate-reader-biotek-gen5" to "biotek-gen-5"
    • Update @idsVersion schema: modify const from "v3.0.0" to "v4.0.0"
    • Update datacubes[*] schema: modify required from ["dimensions", "holder_name", "measures", "name"] to ["dimensions", "measures", "name"]
    • Update datacubes[*].dimensions[*] schema: modify required from ["name", "scale", "unit"] to ["scale", "unit"]
    • Update datacubes[*].dimensions[*].name schema: add enum: ["Null", "Sample Index", "Time", "Wavelength"]
    • Update datacubes[*].dimensions[*].name schema: modify type from ["null", "string"] to "string"
    • Update methods[*] schema: remove required
    • Update methods[*].imaging.channels[*] schema: remove required
    • Update results[*] schema: remove required
    • Update results[*].formulas[*] schema: remove required
    • Update results[*].standard_curves[*] schema: remove required
    • Update results[*].standard_curves[*].coefficients[*] schema: remove required
    • Update runs[*] schema: remove required
    • Update samples[*].labels[*].source.name schema: modify type from "string" to ["null", "string"]
    • Remove methods[*].eject_on_completion
    • Remove methods[*].extended_dynamic_range
    • Remove methods[*].filter_sets
    • Remove methods[*].filter_sets[*]
    • Remove methods[*].filter_sets[*].emission
    • Remove methods[*].filter_sets[*].emission.bandwidth
    • Remove methods[*].filter_sets[*].emission.raw_value
    • Remove methods[*].filter_sets[*].emission.unit
    • Remove methods[*].filter_sets[*].emission.value
    • Remove methods[*].filter_sets[*].excitation
    • Remove methods[*].filter_sets[*].excitation.bandwidth
    • Remove methods[*].filter_sets[*].excitation.raw_value
    • Remove methods[*].filter_sets[*].excitation.unit
    • Remove methods[*].filter_sets[*].excitation.value
    • Remove methods[*].filter_sets[*].gain
    • Remove methods[*].filter_sets[*].gain.raw_value
    • Remove methods[*].filter_sets[*].gain.value
    • Remove methods[*].filter_sets[*].index
    • Remove methods[*].filter_sets[*].optics
    • Remove methods[*].imaging.channels[*].camera_gain
    • Remove methods[*].integration_time
    • Remove methods[*].integration_time.unit
    • Remove methods[*].integration_time.value
    • Remove methods[*].lamp_energy
    • Remove methods[*].light_source
    • Remove methods[*].read
    • Remove methods[*].read.delay
    • Remove methods[*].read.delay.unit
    • Remove methods[*].read.delay.value
    • Remove methods[*].read.height
    • Remove methods[*].read.height.unit
    • Remove methods[*].read.height.value
    • Remove methods[*].read.measurements_per_data_point
    • Remove methods[*].read.speed
    • Remove methods[*].read.type
    • Remove methods[*].read.wells
    • Remove methods[*].wavelengths
    • Remove methods[*].wavelengths[*]
    • Remove methods[*].wavelengths[*].unit
    • Remove methods[*].wavelengths[*].value
    • Remove systems[*].firmware[*].last_updated_timestamp
    • Remove systems[*].software[*].last_updated_timestamp