2021.12_2 Artifact Release
RELEASE DATE: December 22, 2021
Bug Fixes
DE-3015 Dotmatics Raw to IDS pipeline failure
-
Protocol
- namespace:
common
- slug:
dotmatics-compound-raw-to-ids
- version:
v1.0.0
- changelog:
- namespace:
-
Protocol
- namespace:
common
- slug:
dotmatics-compound-raw-to-ids
- version:
v1.1.0
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
dotmatics-util
- version:
v1.2.0
- changelog:
Update to support datetime format for batch date fields (creationDate
,modified_date
andlatest_date
). Previously the parser only accept date format
- namespace:
DE-2836 spr-bruker-sierra
-
IDS
- namespace:
common
- slug:
spr-bruker-sierra
- version:
v4.0.0
- changelog:
- Add requirement for
software[*].name
,software[*].version
- Add
users[*].id
,users[*].type
- Add
samples[*].set
,samples[*].batch
,samples[*].lot
- Add
datacubes[*].name
- Move
related_files
data toruns[*].files
. - Fix ordering of
samples[*].properties
required properties - Fix ordering of
samples[*].labels
required properties
- Add requirement for
- namespace:
-
Protocol
- namespace:
common
- slug:
bruker-sierra-spr32-util
- version:
v2.2.2
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
bruker-sierra-spr32-util
- version:
v3.0.0
- changelog:
- Update to use IDS
common/spr-bruker-sierra:v4.0.0
- Update to use IDS
- namespace:
DE-2946 in IDS lcuv-empower V8.0.0 User that does process data is missing
-
IDS
- namespace:
common
- slug:
lcuv-empower
- version:
v10.0.0
- changelog:
- Add
datacubes[*].scale_to_uv
to IDS fromChannels[*].ScaletouV
- Add
results[*].users[*].name
andresults[*].users[*].type
to hold user information from results
user.name
|AcquiredBy
- Add
- namespace:
-
Protocol
- namespace:
common
- slug:
empower-raw-to-ids
- version:
v3.10.0
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
empower-raw-to-ids
- version:
v9.0.0
- changelog:
- Update parser to follow common/lcuv-empower IDS v10.0.0
- namespace:
Enhancements (New Features and Functionality)
DE-2866 ThermoFisher 7500 qPCR - Create Raw to IDS Parser
-
Protocol
- namespace:
common
- slug:
thermofisher-7500-qpcr-raw-to-ids
- version:
v1.0.0
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
thermofisher-7500-qpcr-raw-to-ids
- version:
v1.0.0
- changelog:
- First Release
- namespace:
DE-2923 Nanotemper, Prometheus NT Plex Differential Scanning Fluorimetry - Update protocol/task script
-
Protocol
- namespace:
common
- slug:
nanotemper-prometheus-raw-to-ids
- version:
v3.3.0
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
nanotemper-prometheus-raw-to-ids
- version:
v5.0.0
- changelog:
- Update to schema v5.0.0
- Drop
samples[*].location
mapping to a "Well ID" on a 384-well plate as it is not a generic case - Use MeltingControlExperiment table to anchor the number of experiments and the starting timestamp of each experiment
- Use aSeries.UtcStarted and aSeries.UtcFinished as the time span of the actual measurement
- namespace:
DE-2963 Force bruker-nmr-raw-to-ids to always use UTC
-
Protocol
- namespace:
common
- slug:
bruker-nmr-raw-to-ids
- version:
v1.1.0
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
bruker-nmr-raw-to-ids
- version:
v1.1.0
- changelog:
- Change datetime parsing function for
runs[*].time.acquired
toutcfromtimestamp
for consistency - Add fault tolerance to sections of code that parse
systems
,samples
,methods
, andruns
to handleNoneType
s
- Change datetime parsing function for
- namespace:
DE-2736 Radiometer America, ABL 90 Flex Plus - Create parser
-
Protocol
- namespace:
common
- slug:
radiometer-america-abl90-raw-to-ids
- version:
v1.0.0
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
radiometer-america-abl90-raw-to-ids
- version:
v1.0.0
- changelog:
- First Release
- namespace:
DE-2819 Create "chromeleon" IDS that supports spectral fields and non-LC data
-
IDS
- namespace:
common
- slug:
thermofisher-chromeleon
- version:
v0.1.0
- changelog:
- Copied lc-chromeleon IDS v1.0.1, and added the following fields relevant to mass spectrometry (MS):
- method.processing.mass_spectrometry_settings (ProcessingMethod.MsSettings)
- method.processing.mass_spectrometry_library_screening_parameters (ProcessingMethod.MsLibraryScreeningParameters)
- Fixed spelling mistakes in field names
- Added "custom_fields" to "run.sequence".
- Copied lc-chromeleon IDS v1.0.1, and added the following fields relevant to mass spectrometry (MS):
- namespace:
DE-2736 Radiometer America, ABL 90 Flex Plus - Create parser
-
Protocol
- namespace:
common
- slug:
radiometer-america-abl90-raw-to-ids
- version:
v1.0.0
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
radiometer-america-abl90-raw-to-ids
- version:
v1.0.0
- changelog:
- First Release
- namespace:
Updated 10 months ago