2021.12_2 Artifact Release
RELEASE DATE: December 22, 2021
Bug Fixes
DE-3015 Dotmatics Raw to IDS pipeline failure
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Protocol
- namespace:
common - slug:
dotmatics-compound-raw-to-ids - version:
v1.0.0 - changelog:
- namespace:
-
Protocol
- namespace:
common - slug:
dotmatics-compound-raw-to-ids - version:
v1.1.0 - changelog:
- namespace:
-
Task Script
- namespace:
common - slug:
dotmatics-util - version:
v1.2.0 - changelog:
Update to support datetime format for batch date fields (creationDate,modified_dateandlatest_date). Previously the parser only accept date format
- namespace:
DE-2836 spr-bruker-sierra
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IDS
- namespace:
common - slug:
spr-bruker-sierra - version:
v4.0.0 - changelog:
- Add requirement for
software[*].name,software[*].version - Add
users[*].id,users[*].type - Add
samples[*].set,samples[*].batch,samples[*].lot - Add
datacubes[*].name - Move
related_filesdata toruns[*].files. - Fix ordering of
samples[*].propertiesrequired properties - Fix ordering of
samples[*].labelsrequired properties
- Add requirement for
- namespace:
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Protocol
- namespace:
common - slug:
bruker-sierra-spr32-util - version:
v2.2.2 - changelog:
- namespace:
-
Task Script
- namespace:
common - slug:
bruker-sierra-spr32-util - version:
v3.0.0 - changelog:
- Update to use IDS
common/spr-bruker-sierra:v4.0.0
- Update to use IDS
- namespace:
DE-2946 in IDS lcuv-empower V8.0.0 User that does process data is missing
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IDS
- namespace:
common - slug:
lcuv-empower - version:
v10.0.0 - changelog:
- Add
datacubes[*].scale_to_uvto IDS fromChannels[*].ScaletouV - Add
results[*].users[*].nameandresults[*].users[*].typeto hold user information from results
user.name|AcquiredBy
- Add
- namespace:
-
Protocol
- namespace:
common - slug:
empower-raw-to-ids - version:
v3.10.0 - changelog:
- namespace:
-
Task Script
- namespace:
common - slug:
empower-raw-to-ids - version:
v9.0.0 - changelog:
- Update parser to follow common/lcuv-empower IDS v10.0.0
- namespace:
Enhancements (New Features and Functionality)
DE-2866 ThermoFisher 7500 qPCR - Create Raw to IDS Parser
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Protocol
- namespace:
common - slug:
thermofisher-7500-qpcr-raw-to-ids - version:
v1.0.0 - changelog:
- namespace:
-
Task Script
- namespace:
common - slug:
thermofisher-7500-qpcr-raw-to-ids - version:
v1.0.0 - changelog:
- First Release
- namespace:
DE-2923 Nanotemper, Prometheus NT Plex Differential Scanning Fluorimetry - Update protocol/task script
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Protocol
- namespace:
common - slug:
nanotemper-prometheus-raw-to-ids - version:
v3.3.0 - changelog:
- namespace:
-
Task Script
- namespace:
common - slug:
nanotemper-prometheus-raw-to-ids - version:
v5.0.0 - changelog:
- Update to schema v5.0.0
- Drop
samples[*].locationmapping to a "Well ID" on a 384-well plate as it is not a generic case - Use MeltingControlExperiment table to anchor the number of experiments and the starting timestamp of each experiment
- Use aSeries.UtcStarted and aSeries.UtcFinished as the time span of the actual measurement
- namespace:
DE-2963 Force bruker-nmr-raw-to-ids to always use UTC
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Protocol
- namespace:
common - slug:
bruker-nmr-raw-to-ids - version:
v1.1.0 - changelog:
- namespace:
-
Task Script
- namespace:
common - slug:
bruker-nmr-raw-to-ids - version:
v1.1.0 - changelog:
- Change datetime parsing function for
runs[*].time.acquiredtoutcfromtimestampfor consistency - Add fault tolerance to sections of code that parse
systems,samples,methods, andrunsto handleNoneTypes
- Change datetime parsing function for
- namespace:
DE-2736 Radiometer America, ABL 90 Flex Plus - Create parser
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Protocol
- namespace:
common - slug:
radiometer-america-abl90-raw-to-ids - version:
v1.0.0 - changelog:
- namespace:
-
Task Script
- namespace:
common - slug:
radiometer-america-abl90-raw-to-ids - version:
v1.0.0 - changelog:
- First Release
- namespace:
DE-2819 Create "chromeleon" IDS that supports spectral fields and non-LC data
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IDS
- namespace:
common - slug:
thermofisher-chromeleon - version:
v0.1.0 - changelog:
- Copied lc-chromeleon IDS v1.0.1, and added the following fields relevant to mass spectrometry (MS):
- method.processing.mass_spectrometry_settings (ProcessingMethod.MsSettings)
- method.processing.mass_spectrometry_library_screening_parameters (ProcessingMethod.MsLibraryScreeningParameters)
- Fixed spelling mistakes in field names
- Added "custom_fields" to "run.sequence".
- Copied lc-chromeleon IDS v1.0.1, and added the following fields relevant to mass spectrometry (MS):
- namespace:
DE-2736 Radiometer America, ABL 90 Flex Plus - Create parser
-
Protocol
- namespace:
common - slug:
radiometer-america-abl90-raw-to-ids - version:
v1.0.0 - changelog:
- namespace:
-
Task Script
- namespace:
common - slug:
radiometer-america-abl90-raw-to-ids - version:
v1.0.0 - changelog:
- First Release
- namespace:
Updated 12 months ago