2022.08_3 Artifact Release
RELEASE DATE: Aug 16, 2022
Bug Fixes
N/A
Enhancements (New Features and Functionality)
BioTek Gen5 IDS and Parser Update
-
Protocol
- namespace:
common
- slug:
biotek-gen5-raw-json-to-ids
- version:
v1.2.0
- changelog:
- Update protocol use task script
common/biotek-gen5-raw-json-to-ids:v3.0.0
- Update protocol use task script
- namespace:
-
Task Script
- namespace:
common
- slug:
biotek-gen5-raw-json-to-ids
- version:
v3.0.0
- changelog:
- Update parser to output
common/plate-reader-biotek-gen5:v4.0.0
IDS - Update protocol parsing to read protocol information from measurement Datasets
- Update parser to support protocols that include kinetic steps
- Update datacube parsing to use fixed linear well indexing for its dimension, e.g. for a 96 well plate A1 -> 1, B1 -> 13, H12 -> 96
- Update datacube parsing to ensure every measure is of equal length
- Update datacube parsing to skip empty datacubes
- Update sample parsing to parse samples when no plate layout definition is included with the protocol
- Rename IDS output file to
0.json
- Update parser to output
- namespace:
-
IDS
- namespace:
common
- slug:
plate-reader-biotek-gen5
- version:
v4.0.0
- changelog:
- Summary of changes:
- Change
method
section to contain a fieldprotocol
to collect measurement protocol data - Add support for luminescence measurement mode
- Add support for kinetic and spectral scan method information for absorbance, fluorescence and luminescence measurement modes
- Add support for multi-step protocols including shaking, dispensing, temperature, delay and carrier movement steps
- Add support for absorbance measurement mode path length correction data
- Change
- Detailed changes:
- Add
datacubes[*].holder_barcode
- Add
methods[*].imaging.channels[*].gain
- Add
methods[*].options
- Add
methods[*].options.discontinuous_kinetics
- Add
methods[*].options.eject_on_completion
- Add
methods[*].options.read_plate_barcode
- Add
methods[*].options.skip_load_plate_dialog
- Add
methods[*].options.use_slower_carrier_speed
- Add
methods[*].protocol
- Add
methods[*].protocol[*]
- Add
methods[*].protocol[*].carrier
- Add
methods[*].protocol[*].carrier.comment
- Add
methods[*].protocol[*].carrier.operation
- Add
methods[*].protocol[*].delay
- Add
methods[*].protocol[*].delay.duration
- Add
methods[*].protocol[*].delay.duration.unit
- Add
methods[*].protocol[*].delay.duration.value
- Add
methods[*].protocol[*].delay.reference_time
- Add
methods[*].protocol[*].dispense
- Add
methods[*].protocol[*].dispense.aligned_dispense
- Add
methods[*].protocol[*].dispense.index
- Add
methods[*].protocol[*].dispense.priming
- Add
methods[*].protocol[*].dispense.priming.mode
- Add
methods[*].protocol[*].dispense.priming.volume
- Add
methods[*].protocol[*].dispense.priming.volume.unit
- Add
methods[*].protocol[*].dispense.priming.volume.value
- Add
methods[*].protocol[*].dispense.rate
- Add
methods[*].protocol[*].dispense.rate.unit
- Add
methods[*].protocol[*].dispense.rate.value
- Add
methods[*].protocol[*].dispense.volume
- Add
methods[*].protocol[*].dispense.volume.unit
- Add
methods[*].protocol[*].dispense.volume.value
- Add
methods[*].protocol[*].dispense.wells
- Add
methods[*].protocol[*].kinetic
- Add
methods[*].protocol[*].kinetic.interval
- Add
methods[*].protocol[*].kinetic.interval.unit
- Add
methods[*].protocol[*].kinetic.interval.value
- Add
methods[*].protocol[*].kinetic.runtime
- Add
methods[*].protocol[*].kinetic.runtime.unit
- Add
methods[*].protocol[*].kinetic.runtime.value
- Add
methods[*].protocol[*].kinetic.sub_protocol
- Add
methods[*].protocol[*].kinetic.sub_protocol[*]
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].carrier
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].carrier.comment
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].carrier.operation
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].delay
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].delay.duration
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].delay.duration.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].delay.duration.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].delay.reference_time
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.aligned_dispense
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.index
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming.mode
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming.volume
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming.volume.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.priming.volume.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.rate
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.rate.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.rate.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.volume
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.volume.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.volume.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].dispense.wells
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.calibrate_before_read
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.index
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.method
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.path_length_correction.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.wavelength
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.wavelength.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.endpoint.wavelength.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.calibrate_before_read
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.start
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.start.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.start.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.step
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.step.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.step.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.stop
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.stop.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.absorbance.spectral_scan.spectrum.stop.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.delay
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.delay.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.delay.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.detection_type
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.position
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.raw_value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.position
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.raw_value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain.mode
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain.raw_value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.gain.wells
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.index
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.filter_set.optics
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.fluorescence_polarization
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.light_source
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.light_source.energy
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.light_source.range
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.light_source.type
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.measurements_per_datapoint
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.mirror
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.collection_time
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.collection_time.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.collection_time.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.delay
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.delay.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.time_resolve.delay.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.top_probe_offset
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.top_probe_offset.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.endpoint.top_probe_offset.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.position
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.raw_value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.wavelength
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.wavelength.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.excitation.wavelength.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.fluorescence_polarization
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.light_source
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.light_source.energy
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.light_source.range
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.light_source.type
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.start
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.start.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.start.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.step
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.step.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.step.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.stop
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.stop.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.fluorescence.spectral_scan.spectrum.stop.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.dynamic_range
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.emission
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain.mode
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain.raw_value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.gain.wells
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.integration_time
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.integration_time.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.integration_time.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.mirror
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.optics
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.top_probe_offset
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.top_probe_offset.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.endpoint.top_probe_offset.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain.mode
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain.raw_value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.gain.wells
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.integration_time
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.integration_time.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.integration_time.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.start
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.start.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.start.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.step
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.step.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.step.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.stop
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.stop.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.luminescence.spectral_scan.spectrum.stop.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.measurements_per_data_point
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.speed
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.type
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.label
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].read.wells
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake.displacement
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake.displacement.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake.displacement.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake.duration
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake.duration.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake.duration.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake.mode
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].shake.orbital_speed
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature.incubate
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature.preheat
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_gradient
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_gradient.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_gradient.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_temperature
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_temperature.unit
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].temperature.set_temperature.value
- Add
methods[*].protocol[*].kinetic.sub_protocol[*].type
- Add
methods[*].protocol[*].read
- Add
methods[*].protocol[*].read.absorbance
- Add
methods[*].protocol[*].read.absorbance.endpoint
- Add
methods[*].protocol[*].read.absorbance.endpoint.calibrate_before_read
- Add
methods[*].protocol[*].read.absorbance.endpoint.index
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.method
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength.unit
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.reference_wavelength.value
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength.unit
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.test_wavelength.value
- Add
methods[*].protocol[*].read.absorbance.endpoint.path_length_correction.value
- Add
methods[*].protocol[*].read.absorbance.endpoint.wavelength
- Add
methods[*].protocol[*].read.absorbance.endpoint.wavelength.unit
- Add
methods[*].protocol[*].read.absorbance.endpoint.wavelength.value
- Add
methods[*].protocol[*].read.absorbance.spectral_scan
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.calibrate_before_read
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.start
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.start.unit
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.start.value
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.step
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.step.unit
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.step.value
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.stop
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.stop.unit
- Add
methods[*].protocol[*].read.absorbance.spectral_scan.spectrum.stop.value
- Add
methods[*].protocol[*].read.delay
- Add
methods[*].protocol[*].read.delay.unit
- Add
methods[*].protocol[*].read.delay.value
- Add
methods[*].protocol[*].read.detection_type
- Add
methods[*].protocol[*].read.fluorescence
- Add
methods[*].protocol[*].read.fluorescence.endpoint
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth.unit
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.bandwidth.value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.position
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.raw_value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength.unit
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.emission.wavelength.value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth.unit
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.bandwidth.value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.position
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.raw_value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength.unit
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.excitation.wavelength.value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain.mode
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain.raw_value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain.value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.gain.wells
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.index
- Add
methods[*].protocol[*].read.fluorescence.endpoint.filter_set.optics
- Add
methods[*].protocol[*].read.fluorescence.endpoint.fluorescence_polarization
- Add
methods[*].protocol[*].read.fluorescence.endpoint.light_source
- Add
methods[*].protocol[*].read.fluorescence.endpoint.light_source.energy
- Add
methods[*].protocol[*].read.fluorescence.endpoint.light_source.range
- Add
methods[*].protocol[*].read.fluorescence.endpoint.light_source.type
- Add
methods[*].protocol[*].read.fluorescence.endpoint.measurements_per_data_point
- Add
methods[*].protocol[*].read.fluorescence.endpoint.mirror
- Add
methods[*].protocol[*].read.fluorescence.endpoint.time_resolved
- Add
methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.collection_time
- Add
methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.collection_time.unit
- Add
methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.collection_time.value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.delay
- Add
methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.delay.unit
- Add
methods[*].protocol[*].read.fluorescence.endpoint.time_resolved.delay.value
- Add
methods[*].protocol[*].read.fluorescence.endpoint.top_probe_offset
- Add
methods[*].protocol[*].read.fluorescence.endpoint.top_probe_offset.unit
- Add
methods[*].protocol[*].read.fluorescence.endpoint.top_probe_offset.value
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth.unit
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.bandwidth.value
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.position
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.raw_value
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.wavelength
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.wavelength.unit
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.excitation.wavelength.value
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.fluorescence_polarization
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.light_source
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.light_source.energy
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.light_source.range
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.light_source.type
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.start
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.start.unit
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.start.value
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.step
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.step.unit
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.step.value
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.stop
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.stop.unit
- Add
methods[*].protocol[*].read.fluorescence.spectral_scan.spectrum.stop.value
- Add
methods[*].protocol[*].read.luminescence
- Add
methods[*].protocol[*].read.luminescence.endpoint
- Add
methods[*].protocol[*].read.luminescence.endpoint.dynamic_range
- Add
methods[*].protocol[*].read.luminescence.endpoint.emission
- Add
methods[*].protocol[*].read.luminescence.endpoint.gain
- Add
methods[*].protocol[*].read.luminescence.endpoint.gain.mode
- Add
methods[*].protocol[*].read.luminescence.endpoint.gain.raw_value
- Add
methods[*].protocol[*].read.luminescence.endpoint.gain.value
- Add
methods[*].protocol[*].read.luminescence.endpoint.gain.wells
- Add
methods[*].protocol[*].read.luminescence.endpoint.integration_time
- Add
methods[*].protocol[*].read.luminescence.endpoint.integration_time.unit
- Add
methods[*].protocol[*].read.luminescence.endpoint.integration_time.value
- Add
methods[*].protocol[*].read.luminescence.endpoint.mirror
- Add
methods[*].protocol[*].read.luminescence.endpoint.optics
- Add
methods[*].protocol[*].read.luminescence.endpoint.top_probe_offset
- Add
methods[*].protocol[*].read.luminescence.endpoint.top_probe_offset.unit
- Add
methods[*].protocol[*].read.luminescence.endpoint.top_probe_offset.value
- Add
methods[*].protocol[*].read.luminescence.spectral_scan
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.gain
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.gain.mode
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.gain.raw_value
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.gain.value
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.gain.wells
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.integration_time
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.integration_time.unit
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.integration_time.value
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.start
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.start.unit
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.start.value
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.step
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.step.unit
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.step.value
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.stop
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.stop.unit
- Add
methods[*].protocol[*].read.luminescence.spectral_scan.spectrum.stop.value
- Add
methods[*].protocol[*].read.measurements_per_datapoint
- Add
methods[*].protocol[*].read.speed
- Add
methods[*].protocol[*].read.type
- Add
methods[*].protocol[*].read.label
- Add
methods[*].protocol[*].read.wells
- Add
methods[*].protocol[*].shake
- Add
methods[*].protocol[*].shake.displacement
- Add
methods[*].protocol[*].shake.displacement.unit
- Add
methods[*].protocol[*].shake.displacement.value
- Add
methods[*].protocol[*].shake.duration
- Add
methods[*].protocol[*].shake.duration.unit
- Add
methods[*].protocol[*].shake.duration.value
- Add
methods[*].protocol[*].shake.mode
- Add
methods[*].protocol[*].shake.orbital_speed
- Add
methods[*].protocol[*].temperature
- Add
methods[*].protocol[*].temperature.incubate
- Add
methods[*].protocol[*].temperature.preheat
- Add
methods[*].protocol[*].temperature.set_gradient
- Add
methods[*].protocol[*].temperature.set_gradient.unit
- Add
methods[*].protocol[*].temperature.set_gradient.value
- Add
methods[*].protocol[*].temperature.set_temperature
- Add
methods[*].protocol[*].temperature.set_temperature.unit
- Add
methods[*].protocol[*].temperature.set_temperature.value
- Add
methods[*].protocol[*].type
- Add
methods[*].well_selection
- Add
runs[*].holder_barcode
- Add
runs[*].time.raw_acquired
- Add
samples[*].labels[*].time.raw
- Add
samples[*].labels[*].time.raw.lookup
- Add
samples[*].properties[*].time.raw
- Add
samples[*].properties[*].time.raw.lookup
- Add
systems[*].firmware[*].time
- Add
systems[*].firmware[*].time.last_updated
- Add
systems[*].firmware[*].time.raw_last_updated
- Add
systems[*].software[*].time
- Add
systems[*].software[*].time.last_updated
- Add
systems[*].software[*].time.raw_last_updated
- Update root schema: modify
$id
from"https://ids.tetrascience.com/common/plate-reader-biotek-gen5/v3.0.0/schema.json"
to"http://ids.tetrascience.com/common/plate-reader-biotek-gen5/v4.0.0/schema.json"
- Update root schema: modify
required
from["@idsConventionVersion", "@idsNamespace", "@idsType", "@idsVersion", "systems"]
to["@idsNamespace", "@idsType", "@idsVersion"]
- Update
@idsType
schema: modifyconst
from"plate-reader-biotek-gen5"
to"biotek-gen-5"
- Update
@idsVersion
schema: modifyconst
from"v3.0.0"
to"v4.0.0"
- Update
datacubes[*]
schema: modifyrequired
from["dimensions", "holder_name", "measures", "name"]
to["dimensions", "measures", "name"]
- Update
datacubes[*].dimensions[*]
schema: modifyrequired
from["name", "scale", "unit"]
to["scale", "unit"]
- Update
datacubes[*].dimensions[*].name
schema: addenum
: ["Null", "Sample Index", "Time", "Wavelength"] - Update
datacubes[*].dimensions[*].name
schema: modifytype
from["null", "string"]
to"string"
- Update
methods[*]
schema: removerequired
- Update
methods[*].imaging.channels[*]
schema: removerequired
- Update
results[*]
schema: removerequired
- Update
results[*].formulas[*]
schema: removerequired
- Update
results[*].standard_curves[*]
schema: removerequired
- Update
results[*].standard_curves[*].coefficients[*]
schema: removerequired
- Update
runs[*]
schema: removerequired
- Update
samples[*].labels[*].source.name
schema: modifytype
from"string"
to["null", "string"]
- Remove
methods[*].eject_on_completion
- Remove
methods[*].extended_dynamic_range
- Remove
methods[*].filter_sets
- Remove
methods[*].filter_sets[*]
- Remove
methods[*].filter_sets[*].emission
- Remove
methods[*].filter_sets[*].emission.bandwidth
- Remove
methods[*].filter_sets[*].emission.raw_value
- Remove
methods[*].filter_sets[*].emission.unit
- Remove
methods[*].filter_sets[*].emission.value
- Remove
methods[*].filter_sets[*].excitation
- Remove
methods[*].filter_sets[*].excitation.bandwidth
- Remove
methods[*].filter_sets[*].excitation.raw_value
- Remove
methods[*].filter_sets[*].excitation.unit
- Remove
methods[*].filter_sets[*].excitation.value
- Remove
methods[*].filter_sets[*].gain
- Remove
methods[*].filter_sets[*].gain.raw_value
- Remove
methods[*].filter_sets[*].gain.value
- Remove
methods[*].filter_sets[*].index
- Remove
methods[*].filter_sets[*].optics
- Remove
methods[*].imaging.channels[*].camera_gain
- Remove
methods[*].integration_time
- Remove
methods[*].integration_time.unit
- Remove
methods[*].integration_time.value
- Remove
methods[*].lamp_energy
- Remove
methods[*].light_source
- Remove
methods[*].read
- Remove
methods[*].read.delay
- Remove
methods[*].read.delay.unit
- Remove
methods[*].read.delay.value
- Remove
methods[*].read.height
- Remove
methods[*].read.height.unit
- Remove
methods[*].read.height.value
- Remove
methods[*].read.measurements_per_data_point
- Remove
methods[*].read.speed
- Remove
methods[*].read.type
- Remove
methods[*].read.wells
- Remove
methods[*].wavelengths
- Remove
methods[*].wavelengths[*]
- Remove
methods[*].wavelengths[*].unit
- Remove
methods[*].wavelengths[*].value
- Remove
systems[*].firmware[*].last_updated_timestamp
- Remove
systems[*].software[*].last_updated_timestamp
- Add
- Summary of changes:
- namespace:
Updated 10 months ago