IDS

• namespace: common
• slug: microscope-zeiss
• version: v1.0.0
• changelog:
  • IDS following standard convention
  • Mapping from v0.2.0 to v1.0.0
  • Multiple values made into Unit/value pairs
  • Multiple hardware items added: emission filters, dichroic filters, reflectors, detectors, lasers
  • Image thumbnail and full metadata JSON made into S3 files referenced from related_files
  • All hardware settings parsed in a parameter-like array with type detection
  • Multiple size parameters added
  • Filter set object reflecting the raw metadata structure

Protocol

• namespace: common
• slug: teledyne-hanson-research-elite8-raw-to-ids
• version: v1.1.0
• changelog:

Task Script

• namespace: common
• slug: teledyne-hanson-research-elite8-raw-to-ids
• version: v1.1.0
• changelog:
  • Add convert_raw_string function to convert input file to human readable file
  • Update logic to support a new version of the IoT driver

Protocol

• namespace: common
• slug: waters-masslynx-raw-to-ids
• version: v3.0.0
• changelog:
  • Restructure protocol to combine two python steps into single one
  • Protocol now consists of chromatogram extraction (previously step 2) followed by raw file extraction and IDS creation (previously step 1 and 3, respectively)
  • Update to use common/masslynx-util:v4.1.0

Task Script

• namespace: common
• slug: masslynx-util
• version: v4.1.0
• changelog:
  • Add new function parse-raw-zip-and-chromatogram-to-ids-json which combines the work done by parse-raw-json-to-ids and parse-raw-zip-to-raw-json
  • Intermediate JSON files produced from input masslynx files can now be optionally output as "TMP" files, default is "PROCESSED"

Protocol

• namespace: common
• slug: hrb-cellario-unzip-and-upload
• version: v1.1.2
• changelog:
  • Update to use common/hrb-cellario-util:v1.1.2

Task Script

• namespace: common
• slug: hrb-cellario-util
• version: v1.1.2
• changelog:
  • Allow search for any value for Order.Parameters.Name