2022.2_2-1 Artifact Release
RELEASE DATE: 2022-02-28
Bug Fixes
DE-3386 Fix HRB Cellario input parameter fetching
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Protocol
- namespace:
common - slug:
hrb-cellario-unzip-and-upload - version:
v1.1.1 - changelog:
- Update to use task script
common/hrb-cellario-util:v1.1.1
- Update to use task script
- namespace:
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Task Script
- namespace:
common - slug:
hrb-cellario-util - version:
v1.1.1 - changelog:
- Fix pipeline config parameters handling bug
- namespace:
DE-3358 Miltenyi MacQuant - FCS task script improvement
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Protocol
- namespace:
common - slug:
fcs-raw-to-ids - version:
v1.1.2 - changelog:
- Update to use task script
common/fcs-raw-to-id:v1.1.2
- Update to use task script
- namespace:
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Task Script
- namespace:
common - slug:
fcs-raw-to-ids - version:
v1.1.2 - changelog:
timecan now be based on identifiers in channels
- namespace:
DE-3164 Zendesk #1556 - Bruker NMR Pipeline Failures
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IDS
- namespace:
common - slug:
nmr-bruker - version:
v2.0.0 - changelog:
- Add
runs[*].titleto schema and RAW to IDS Mapping table - Add missing fields to
root.properties.runs.items.properties.dimension.modeto conform with the IDS Validator's expectations
- Add
- namespace:
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Protocol
- namespace:
common - slug:
bruker-nmr-raw-to-ids - version:
v1.2.0 - changelog:
- Update to use task script
common/bruker-nmr-raw-to-ids:v1.1.2
- Update to use task script
- namespace:
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Task Script
- namespace:
common - slug:
bruker-nmr-raw-to-ids - version:
v2.0.0 - changelog:
- Add support for Bruker NMR files where
GPNAM,SPNAM,CPDPRGfields are included in expanded form- I.e.: Rather than having a list of filenames under the heading
##$GPNAM= (0..31),GPNAMmappings are on their own lines like##$GPNAM1= < F O O.bar>and##$GPNAM31= <foo.bar>
- I.e.: Rather than having a list of filenames under the heading
- Introduce more concise logic for fetching data; improving consistency of data population
- Update to use IDS
common/nmr-bruker:v2.0.0- Add
runs[*].titleto final IDS JSON output. This data is fetched from thepdata/1/titlefile, if it is present
- Add
- Begin support for Programmatic IDS by creating
pydanticobjects to model a python object against the IDS schema - Update all tests to support
pydanticobjects and expand each test case to their own functions
- Add support for Bruker NMR files where
- namespace:
DE-3161 Zendesk #1553 - Xcalibur pipeline failure - process cannot access file
Note this ticket is not fully done yet. This is only the task script part.-
Task Script
- namespace:
common - slug:
thermofisher-xcalibur-windows - version:
v1.6.0 - changelog:
- Fix "disk space not enough" error
- Fix "the process can not delete file" error
- namespace:
Enhancements (New Features and Functionality)
DE-2746 Molecular Devices SoftMax Pro - IDS
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IDS
- namespace:
common - slug:
plate-reader-molecular-devices-softmax-pro - version:
v1.0.0 - changelog:
- First Release
- namespace:
Updated 12 months ago