2022.06_3 Artifact Release
RELEASE DATE: June 21, 2022
Bug Fixes
DE-4133 [Unchained Labs][Lunatic] Bug fix - header information
-
Protocol
- namespace:
common
- slug:
unchained-labs-lunatic-util
- version:
v2.6.1
- changelog:
- Update to use task script
common/unchained-labs-lunatic-util:v6.0.1
- Update to use task script
- namespace:
-
Task Script
- namespace:
common
- slug:
unchained-labs-lunatic-util
- version:
v6.0.1
- changelog:
- Update xlsx parser in cases of unexpected format in Application
- namespace:
Enhancements (New Features and Functionality)
DE-4160 PerkinElmer Envision - change IDS filename back to {index}.json format
-
Protocol
- namespace:
common
- slug:
perkinelmer-envision-raw-to-ids
- version:
v2.6.1
- changelog:
- namespace:
-
Task Script
- namespace:
common
- slug:
perkinelmer-envision-raw-to-ids
- version:
v5.1.1
- changelog:
- Update IDS filename to
{index}.json
format
- Update IDS filename to
- namespace:
DE-4159 Cytiva AKTA - change IDS filename back to {index}.json format
-
Protocol
- namespace:
common
- slug:
akta-raw-to-ids
- version:
v3.1.1
- changelog:
- Update to use
common/akta-raw-to-ids:v3.1.1
task script
- Update to use
- namespace:
-
Task Script
- namespace:
common
- slug:
akta-raw-to-ids
- version:
v3.1.1
- changelog:
- Revert naming convention of output to
0.json
- Revert naming convention of output to
- namespace:
DE-3918 [R-1397] Update ViiA7 IDS accommodate multiple targets per sample and additional fields requested by REGN
-
IDS
- namespace:
common
- slug:
qpcr-thermofisher-viia7
- version:
v4.0.0
- changelog:
- Add property
methods[*].targets
- Add property
results[*].target_name
- Add property
runs[*].bulb_usage
- Add property
runs[*].errors
- Add multi-component datacube for each reporter found in the input files (not just hard-coded FAM or FOX)
- Update root
$id
fromhttps://ids.tetrascience.com/common/qpcr-thermofisher-viia7/v3.0.0/schema.json
tohttps://ids.tetrascience.com/common/qpcr-thermofisher-viia7/v4.0.0/schema.json
- Update
@idsVersion
const
fromv3.0.0
tov4.0.0
- Update
results[*]
required
from['@link', 'cycle_threshold', 'name', 'omit']
to['@link', 'cycle_threshold', 'name', 'omit', 'target_name']
- Update
samples[*]
remove schema item"required": ["@link"]
- Update
samples[*].labels[*].source.name
type
fromstring
to['null', 'string']
- Update datacubes to store amplification data per sample/target combination
- Update Raw to IDS mapping table for raw files extracted directly from
.eds
files without the export software. - Remove property
methods[*].baseline
because baseline information was moved tomethods[*].targets[*].baseline
- Remove property
methods[*].cycle_threshold_threshold
because cycle threshold information was moved tomethods[*].targets[*].cycle_threshold_threshold
- Remove property
samples[*].@link
- Add property
- namespace:
DE-3917 [R-1020] Create ViiA 7 RAW EDS to IDS JSON parser
-
Protocol
- namespace:
common
- slug:
thermofisher-viia7-eds-raw-to-ids
- version:
v1.0.0
- changelog:
- First release
- namespace:
-
Task Script
- namespace:
common
- slug:
thermofisher-viia7-eds-raw-to-ids
- version:
v1.0.0
- changelog:
- First release
- namespace:
DE-3870 [Chemstation] IDS and Parser updates
-
IDS
- namespace:
common
- slug:
agilent-chemstation
- version:
v2.0.0
- changelog:
- Changed
methods[0].detection.uv_vis_settings[*].peak_width
from value-unit object to nullable string - Changed
systems[0].component.column
to array so multiple columns can be captured - Added
methods[0].custom_fields
to capture custom sample and compound fields underCustom_Fields
in raw json - Added default value of
null
tousers[0].id
- Changed
results[*].retention_time
to nested time value-unit field (results[*].retention.time<value & unit>
)
- Changed
- namespace:
DE-3323 Luminex xPONENT (MagPix) parser
-
Task Script
- namespace:
common
- slug:
luminex-xponent-raw-to-ids
- version:
v1.0.0
- changelog:
- Created Initial Parser
- namespace:
-
Protocol
- namespace:
common
- slug:
luminex-xponent-raw-to-ids
- version:
v1.0.0
- changelog:
- initial release
- namespace:
Updated 10 months ago