2022.05_3 Artifact Release
RELEASE DATE: May 17, 2022
Enhancements (New Features and Functionality)
DE-3759 PerkinElmer LabChip GXII Touch
-
IDS
- namespace:
common
- slug:
plate-reader-perkinelmer-labchip
- version:
v4.0.0
- changelog:
- Add support for
<experiment-name>_WellTable.csv
export files - Add support for
<experiment-name>_Data_<sample-label>.csv
export files - Add support for
<sample-name>_<experiment-name>_Egram_<sample-label>.Tif
export images - Add support for
<sample-name>_<experiment-name>_Gel_<sample-label>.Tif
export images - Add field
systems[*].software
- Move field
samples[*].location.holder.plate_file
tomethods[*].file_name
- Remove requirement for field
results[*].chip_id
- Add field
methods[*].assay_name
- Add field
methods[*].size_unit
- Add field
methods[*].concentration_unit
- Add field
methods[*].data.frequency
- Add field
methods[*].data.start_time
- Add field
methods[*].data.end_time
- Add field
methods[*].ladder_sizes[*]
- Add field
methods[*].size_unit
- Move field
results[*].acquisition_time
toresults[*].time.acquired
- Add field
results[*].analysis_error
- Add field
results[*].calibration.slope
- Add field
results[*].calibration.intercept
- Add field
results[*].ladder_quality_score
- Add field
results[*].peak_count.total
- Add field
results[*].peak_count.expected
- Add field
results[*].peak_count.filtered
- Add field
results[*].electropherogram_image
- Add field
results[*].gel_image
- Add field
results[*].total_concentration
- Convert field
results[*].peaks[*].concentration
from typenumber
tovalue_unit_object
- Add field
results[*].time.zero
- Rename field
results[*].well_position
toresults[*].position
to maintain key consistency with join field sourcesamples[*].location.position
- Move field
results[*].peaks[*].signal_noise
toresults[*].signal_noise
as signal_noise values are unique per well, not per peak - Move field
results[*].peaks[*].comments
toresults[*].comments
as comments are unique per well, not per peak - Add top level field
datacubes
to capture raw data from<experiment-name>_Data_<sample-label>.csv
files - Rename
results[*].plate_index
toresults[*].holder_index
and set as required - Remove requirement for field
results[*].peaks[*].number
- Remove requirement for field
results[*].peaks[*].index
- Remove requirement for field
results[*].peaks[*].type
- Remove requirement for field
results[*].peaks[*].concentration
- Remove requirement for field
results[*].peaks[*].expected_protein
- Remove requirement for field
results[*].peaks[*].baseline
- Remove requirement for field
results[*].peaks[*].signal_noise
- Remove requirement for field
results[*].peaks[*].height
- Remove requirement for field
results[*].peaks[*].area
- Remove requirement for field
results[*].peaks[*].full_width_at_half_maximum
- Remove requirement for field
results[*].peaks[*].migration_time
- Add support for
- namespace:
-
Protocol
- namespace:
common
- slug:
perkinelmer-labchip-gxii-touch-raw-to-ids
- version:
v2.2.0
- changelog:
- Update to use task script
common/perkinelmer-labchip-gxii-touch-raw-to-ids:v4.0.0
- Update to use task script
- namespace:
-
Task Script
- namespace:
common
- slug:
perkinelmer-labchip-gxii-touch-raw-to-ids
- version:
v4.0.0
- changelog:
- Use IDS version
v4.0.0
- Add support for more export files
*_WellTable.csv
*_Data_<well-label>.csv
*_Electropherogram_<well-label>.tif
*_Gel_<well-label>.tif
- Use IDS version
- namespace:
DE-3752 Xcalibur - ProteoWizard raw to mzML
-
Protocol
- namespace:
common
- slug:
proteowizard-msconvert
- version:
v1.0.0
- changelog:
- First release
msconvert
command line arguments are captured via pipeline config on TDP
- First release
- namespace:
DE-3548 Shimadzu -- Can not output chromatograms data for some LCD data files
-
Task Script
- namespace:
common
- slug:
shimadzu-windows
- version:
v1.0.5
- changelog:
- Add ChannelNumber to LSSChromatogramObjectNumber object, since some of the chromatogram data is reading by channel number now.
- Add a new checking for the number of LSS and PDA chromatogram objects. We could read a number from Shimadzu API and compare it with number of objects in our list and make sure those two numbers are equal. If not, output error message.
- Update Shimadzu API from 3.5.0 to 3.8.1
- Add unit test project.
- Update all the sample files.
- namespace:
Updated 11 months ago