2021.12_1 Artifact Release

RELEASE DATE: DECEMBER 8, 2021

Bugs

DE-2830 plate-reader-bmg-labtech-nephelometry-fluorescence
  • IDS

    • namespace: common
    • slug: plate-reader-bmg-labtech-nephelometry-fluorescence
    • version: v1.0.1
    • changelog:
      • Fix bug in definition of nullable_boolean's type, from ["string", "null"] to ["boolean", "null"]
  • Protocol

    • namespace: common
    • slug: bmg-labtech-plate-reader-raw-to-ids
    • version: v1.0.1
    • changelog:
      • Update to use task script common/bmg-labtech-util:v6.0.1
  • Task Script

    • namespace: common
    • slug: bmg-labtech-util
    • version: v6.0.1
    • changelog:
      • Update Nephelometry and Fluorescence IDS JSON outputs to use IDS common/plate-reader-bmg-labtech-nephelometry-fluorescence:v1.0.1, no other changes affecting the IDS JSON output
DE-2966 Fix masslynx-util/v4.0.1 tests, DE-2908 ms-masslynx
  • IDS

    • namespace: common
    • slug: ms-masslynx
    • version: v4.0.1
    • changelog:
      • Add ['name','measures','dimensions'] to the list of required fields for datacubes to follow IDS conventions
  • Protocol

    • namespace: common
    • slug: waters-masslynx-raw-to-ids
    • version: v2.2.2
    • changelog:
      • Update to use masslynx-util v4.0.2
  • Task Script

    • namespace: common
    • slug: masslynx-util
    • version: v4.0.2
    • changelog:
      • Update to use IDS common/ms-masslynx:v4.0.1: @idsVersion in the output IDS JSON changes from v4.0.0 to v4.0.1 with no other change

Enhancements (New Features and Functionality)

DE-2936 Little Lunatic, and Big Lunatic Changes
  • Protocol

    • namespace: common
    • slug: unchained-labs-lunatic-util
    • version: v2.3.3
    • changelog:
      • Update to use task script unchained-labs-lunatic-util:v4.3.0
  • Task Script

    • namespace: common
    • slug: unchained-labs-lunatic-util
    • version: v4.3.0
    • changelog:
      • Update Lunatic Protein Concentration parser to not require the presence of the Sample name column in the raw data
      • Update parser to not fail if date column is empty
DE-2885 Nanotemper, Prometheus NT Plex Differential Scanning Fluorimetry - Update IDS
  • IDS

    • namespace: common
    • slug: dsf-nanotemper-prometheus
    • version: v5.0.0
    • changelog:
      • Each sample is linked to its capillary tube.
        The capillary tubes in one experiment are sorted by its index as indicated in tCapillary.IndexOnParentContainer.
        Sample identity of each melting curve is tracked in table tCapillary with mMeltingCurve.container == tCapillary.ID column.
        results[*].measures[*].temperatures of each curve are tracked in table InflectionPoint and table MeltingCurveMarker via the InflectionPoint.MeltingCurve == mMeltingCurve.ID column or MeltingCurveMarker.MeltingCurve == mMeltingCurve.ID.
      • Merge results[*].measures[*].melting_temperatures[*] and results[*].measures[*].onset_temperature to results[*].measures[*].temperatures[*]
      • Explicitly exclude handling and discovery records that do not fall in the time span of an experiment, as noted by aSeries.Caption == "Performing melting curve scan".
      • Calculate and include "temperature slope" for each experiment step. This requires using MeltingCurveScan to identify experiment steps.
      • Include Operator.FullName, Operator.Initials, and Operator.LoginName in users[*].
      • In table Annotation, records with AnnotationRole == "target" and AnnotationType == "dlmless" is used to as samples[*].id to be consistent with the software UI.
      • Add datacubes[*].name as <StartingTemperature> -(<Duration>)- <EndTemperature> for each experiment step.
DE-2692 Create v0 Leica Aperio Parser
  • Protocol

    • namespace: common
    • slug: leica-aperio-raw-to-ids
    • version: v0.1.0
    • changelog:
      • First release
  • Task Script

    • namespace: common
    • slug: leica-aperio-raw-to-ids
    • version: v0.1.0
    • changelog:
      • First release
DE-2523 Bio-Rad Gel Doc XR+ - Create Raw to IDS Parser
  • Protocol

    • namespace: common
    • slug: bio-rad-gel-doc-xr-raw-to-ids
    • version: v1.0.0
    • changelog:
      • First release
  • Task Script

    • namespace: common
    • slug: bio-rad-gel-doc-xr-raw-to-ids
    • version: v1.0.0
    • changelog:
      • First release

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