2022.06_2 Artifact Release

RELEASE DATE: June 15, 2022

Bug Fixes

DE-4028 Osmotech protocol
  • Protocol

    • namespace: common
    • slug: advanced-instruments-osmometer-raw-to-ids
    • version: v2.0.2
    • changelog:
      • Update to use common/advanced-instruments-osmometer-raw-to-ids:v2.0.2 task script
  • Task Script

    • namespace: common
    • slug: advanced-instruments-osmometer-raw-to-ids
    • version: v2.0.2
    • changelog:
      • Update mapping.json to include samples[*].id
DE-3828, DE-3829, DE-3830 Bruker Sierra SPR-32 injection, rack, and ligand parsing bug
  • Protocol

    • namespace: common
    • slug: bruker-sierra-spr32-util
    • version: v2.2.4
    • changelog:
      • Update to use task script common/bruker-sierra-spr32-util:v3.0.2
  • Task Script

    • namespace: common
    • slug: bruker-sierra-spr32-util
    • version: v3.0.2
    • changelog:
      • Fix injection parsing bug where non-injection events from from AssayData.Method.BatchElements.BatchMethodElement.Commands.BatchCommand were added to methods[*].cycles[*].injections[].
      • Fix rack parsing bug where the racks DWP384, MTP96, and CRR3x8 would cause an
        error or be parsed as an incorrect rack type.
      • Fix ligand parsing bugs that caused systems[0].component.sensor.multiple_ligands
        to always be True and always parsing ligands as though only a single ligand was present.
DE-4125 Create Protocol for Xcalibur parser
  • Protocol

    • namespace: common
    • slug: thermofisher-xcalibur-raw-to-ids
    • version: v3.6.1
    • changelog:
      • Update to use task script common/thermofisher-xcalibur-raw-json-to-ids:v6.1.1

Enhancements (New Features and Functionality)

DE-3939 TA Instruments TGA update IDS
  • IDS

    • namespace: common
    • slug: thermogravimetric-analyzer-ta-q500
    • version: v2.0.0
    • changelog:
      • Update Readme to follow current convention
      • Update schema.json to follow @idsConventionVersion version 1.0.0
        • Change samples section
        • Change systems section to add software and module
        • Change methods section
      • Change runs section to add pan_number, weight fields
      • Update elasticsearch.json to match the new schema
      • Add more sample files
DE-3872 Flowcam - Update IDS for software v5
  • IDS

    • namespace: common
    • slug: flow-imaging-microscopy-yft-flowcam
    • version: v5.0.0
    • changelog:
      • Add the following to results[*].summary_stats[*] that are new for v5 of the VisualSpreadsheet Particle Analysis software (ViSP)
        • harmonic_mean and total stats, each with value and unit
        • percentiles that contain a list of objects with percentile, value, and unit keys
      • Update results[*].filter_grid[*].particle_per_milliliter to results[*].filter_grid[*].particles_per_milliliter
      • Update in results[*].filter_metadata[*]. the following to correct names and to make them consistent with items in filter_grid:
        • nullable number particle_count to value/unit count
        • nullable number particle_per_milliliter to value/unit particles_per_image
        • nullable number particle_per_inch to value/unit particles_per_image
DE-3901 [Big Lunatic] Update parser with new requirements
  • Protocol

    • namespace: common
    • slug: unchained-labs-lunatic-util
    • version: v2.6.0
    • changelog:
      • Update to use task script common/unchained-labs-lunatic-util:v6.0.0
  • Task Script

    • namespace: common
    • slug: unchained-labs-lunatic-util
    • version: v6.0.0
    • changelog:
      • Update to use IDS common/plate-reader-unchained-labs-lunatic:v6.0.0
DE-4129 Add labels to dataweave-util
  • Protocol

    • namespace: common
    • slug: decorate-with-dataweave
    • version: v1.0.4
    • changelog:
      • Update to use task script common/dataweave-util:v1.0.4
  • Protocol

    • namespace: common
    • slug: transform-with-dataweave
    • version: v1.0.4
    • changelog:
      • Update to use task script common/dataweave-util:v1.0.4
  • Task Script

    • namespace: common
    • slug: dataweave-util
    • version: v1.0.4
    • changelog:
      • Update main to pass input file labels as 'customLabels' to the eql search allowing the ability to find reference file using data from input file's labels

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