2022.06_1 Artifact Release

RELEASE DATE: June 8, 2022

Bug Fixes

DE-2120 Renishaw pipeline fails with OOM for big file
  • Task Script

    • namespace: common
    • slug: renishaw-invia-raw-to-ids
    • version: v2.1.0
    • changelog:
      • Improve performance by validating using a pre-compiled version of the schema
      • In resulting IDS JSON:
        • Remove whitespace to reduce memory usage
        • Replace non-compliant nan, inf, -inf values with null
  • Protocol

    • namespace: common
    • slug: renishaw-invia-raw-to-ids
    • version: v1.3.0
    • changelog:
      • Update to use task script common/renishaw-invia-raw-to-ids:v2.1.0

Enhancements (New Features and Functionality)

DE-3904 Update IDS with new requirements
  • IDS

    • namespace: common
    • slug: plate-reader-unchained-labs-lunatic
    • version: v6.0.0
    • changelog:
      • All changes due to new xlsx format which includes header information
      • Capture header info Test performed by in users[*].name
      • Capture header info Software version in systems[*].software.version
      • Add systems[*].client_version to capture header info Client version
      • Capture header info Experiment name in runs[*].experiment_name
      • Changed methods[*].application to object containing name and version
        • Version information will be derived from header info Application
      • Added methods[*].blanks to capture header info Blanks
      • Added runs[*].number_of_plates to capture header info Nr of Plates
DE-3971 Add manual values to extract to decorate
  • Task Script

    • namespace: common
    • slug: file-util
    • version: v2.2.0
    • changelog:
      • Add option for a manual value key to input.mappings[*]["targets"][*]
  • Task Script

    • namespace: common
    • slug: fcs-raw-to-ids
    • version: v2.0.0
    • changelog:
      • Add related_files to schema.json
      • Remove datacubes[0].measures.value and datacubes[0].dimensions.scale from IDS into a parquet file
      • Add logging
  • Protocol

    • namespace: common
    • slug: extract-to-decorate
    • version: v2.2.0
    • changelog:
      • Update to use task script common/file-util:v2.2.0
      • Add option for manual value to replace captured regex search result

Did this page help you?