2022.07_1 Artifact Release

RELEASE DATE: July 6, 2022

DE-4144 Address BMG Labtech Bugs
  • Task Script

    • namespace: common
    • slug: bmg-labtech-util
    • version: v6.0.2
    • changelog:
      • Fix parsing to treat - as a null measurement value in spectra tables and multi-channel or multi-chromatic table
      • Update IDS JSON export to follow the convention of not including indentation
      • Improve error messages for unsupported or invalid input files or zips
  • Protocol

    • namespace: common
    • slug: bmg-labtech-plate-reader-raw-to-ids
    • version: v1.0.2
    • changelog:
      • Update to use task script common/bmg-labtech-util:v6.0.2
DE-4134 Investigate Xcalibur "list indicies must be integers" error
  • Protocol

    • namespace: common
    • slug: thermofisher-xcalibur-raw-to-ids
    • version: v3.6.2
    • changelog:
      • Update to use task script common/thermofisher-xcalibur-raw-json-to-ids:v6.1.2
  • Task Script

    • namespace: common
    • slug: thermofisher-xcalibur-raw-json-to-ids
    • version: v6.1.1
    • changelog:
      • Fix bug where an empty Data field in StatusLogSummaryStatistics caused input file to be treated as incorrect version.
  • Task Script

    • namespace: common
    • slug: thermofisher-xcalibur-raw-json-to-ids
    • version: v6.1.2
    • changelog:
      • Fig bug of TypeError: list indices must be integers or slices, not str occurring in parse_exactive_ms.py. The bug occurs when InstrumentMethodProperties[*].InstrumentName contains exactive, and the corresponding InstrumentMethodProperties[*].Value is an empty string
DE-3868 Fix wyatt-dynapro crash on input files with missing "average" fields
  • Task Script

    • namespace: common
    • slug: wyatt-dynapro-raw-to-ids
    • version: v7.0.2
    • changelog:
      • Update the unit names for molecular weight and counts per second to conform to standardized names
        • kiloDalton changed to KiloDalton
        • kCountsPerSecond changed to KilocountsPerSecond
  • Task Script

    • namespace: common
    • slug: wyatt-dynapro-raw-to-ids
    • version: v7.0.3
    • changelog:
      • Update to accept files with missing averaged value rows. These missing averages are set to null.
  • Protocol

    • namespace: common
    • slug: wyatt-dynapro-raw-to-ids
    • version: v4.3.3
    • changelog:
      • Update to use task script common/wyatt-dynapro-raw-to-ids:v7.0.3
DE-4112 Add Peak table and Compound table to output Raw Json file
  • Task Script

    • namespace: common
    • slug: shimadzu-windows
    • version: v1.0.6
    • changelog:
      • Add peak and compound table for MS, UV and PDA data
DE-4194 Add missing element to Shimadzu mzML pipeline
  • Task Script

    • namespace: common
    • slug: shimadzu-labsolutions-add-chromatogram-to-mzml
    • version: v1.0.0
    • changelog:
  • Task Script

    • namespace: common
    • slug: shimadzu-labsolutions-add-chromatogram-to-mzml
    • version: v1.1.0
    • changelog:
      • Added missing defaultArrayLength and encodedLength fields to parser.

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