• Task Script

  • namespace: common
  • slug: agilent-chemstation-raw-json-to-ids
  • version: v3.1.2
  • changelog:
    • Add support for variable software name/versions strings
    • Add improved error handling and warnings for methods[*].detection

• Protocol

  • namespace: common
  • slug: agilent-chemstation-raw-to-ids
  • version: v4.0.2
  • changelog:
    • Updated second step to use task script common/agilent-chemstation-raw-json-to-ids:v3.1.2
    • Increased container memory size to 4096 MB for both steps

❗️

Bug

There is a bug discovered after testing the protocol. Please don't use this version.

• Task Script

  • namespace: common
  • slug: bruker-nmr-raw-to-ids
  • version: v2.0.1
  • changelog:
    • Fix parsing of barcode data appearing in AUTOPOS section of input file
    • Update output filename to be of the form <ids namespace>-<ids slug>-<file suffix>

• Protocol

  • namespace: common
  • slug: bruker-nmr-raw-to-ids
  • version: v1.3.0
  • changelog:
    • Update to use task script common/bruker-nmr-raw-to-ids:v2.0.1

• IDS

  • namespace: common
  • slug: plate-reader-bmg-labtech-absorbance
  • version: v2.0.0
  • changelog:
    • Add field runs[*].time.raw.start, which contains the raw datetime string from the input file before it is parsed.
    • Add fields samples[*].properties[*].time.raw.lookup and samples[*].labels[*].time.raw.lookup, which contains the raw datetime strings.

• IDS

  • namespace: common
  • slug: plate-reader-bmg-labtech-nephelometry-fluorescence
  • version: v2.0.0
  • changelog:
    • Add field runs[*].time.raw.start, which contains the raw datetime string from the input file before it is parsed.
    • Add fields samples[*].properties[*].time.raw.lookup and samples[*].labels[*].time.raw.lookup, which contains the raw datetime strings.

• Task Script

  • namespace: common
  • slug: bmg-labtech-util
  • version: v7.0.0
  • changelog:
    • Update to new datetime parsing strategy
    • Update to IDS common/plate-reader-bmg-labtech-absorbance:v2.0.0 and common/plate-reader-bmg-labtech-nephelometry-fluorescence:v2.0.0, which stores raw datetimes with the parsed datetime (eg. time.start will now also have time.raw.start). If the datetime cannot be parsed, null is stored
    • Update input to a Datetime Parsing Configuration object, which can contain specific datetime formats in datetime_formats, or day_first/year_first options, as well as custom timezone_mapping

• Protocol

  • namespace: common
  • slug: bmg-labtech-plate-reader-raw-to-ids
  • version: v1.1.0
  • changelog:
    • Update to use task script common/bmg-labtech-util:v7.0.0
    • Change input to Datetime Parsing Configuration object

• Task Script

  • namespace: common
  • slug: unchained-labs-lunatic-util
  • version: v6.0.3
  • changelog:
    • Update to convert empty or n/a strings to null values in results and datacubes

• Protocol

  • namespace: common
  • slug: unchained-labs-lunatic-util
  • version: v2.6.2
  • changelog:
    • Update to use task script common/unchained-labs-lunatic-util:v6.0.3