2022.3_1-2 Artifact Release

RELEASE DATE: 2022-03-17

Bug Fixes

N/A

Enhancements (New Features and Functionality)

DE-2587 Update Zeiss IDS to standard convention
  • IDS

    • namespace: common
    • slug: microscope-zeiss
    • version: v1.0.0
    • changelog:
      • IDS following standard convention
      • Mapping from v0.2.0 to v1.0.0
      • Multiple values made into Unit/value pairs
      • Multiple hardware items added: emission filters, dichroic filters, reflectors, detectors, lasers
      • Image thumbnail and full metadata JSON made into S3 files referenced from related_files
      • All hardware settings parsed in a parameter-like array with type detection
      • Multiple size parameters added
      • Filter set object reflecting the raw metadata structure
DE-3209 Hanson Research Elite 8 - Update raw to IDS Pipeline
  • Protocol

    • namespace: common
    • slug: teledyne-hanson-research-elite8-raw-to-ids
    • version: v1.1.0
    • changelog:
  • Task Script

    • namespace: common
    • slug: teledyne-hanson-research-elite8-raw-to-ids
    • version: v1.1.0
    • changelog:
      • Add convert_raw_string function to convert input file to human readable file
      • Update logic to support a new version of the IoT driver
DE-3362 Waters MassLynx - combine Python steps
  • Protocol

    • namespace: common
    • slug: waters-masslynx-raw-to-ids
    • version: v3.0.0
    • changelog:
      • Restructure protocol to combine two python steps into single one
      • Protocol now consists of chromatogram extraction (previously step 2) followed by raw file extraction and IDS creation (previously step 1 and 3, respectively)
      • Update to use common/masslynx-util:v4.1.0
  • Task Script

    • namespace: common
    • slug: masslynx-util
    • version: v4.1.0
    • changelog:
      • Add new function parse-raw-zip-and-chromatogram-to-ids-json which combines the work done by parse-raw-json-to-ids and parse-raw-zip-to-raw-json
      • Intermediate JSON files produced from input masslynx files can now be optionally output as "TMP" files, default is "PROCESSED"
DE-3514 Remove regex in Cellario unzip utility
  • Protocol

    • namespace: common
    • slug: hrb-cellario-unzip-and-upload
    • version: v1.1.2
    • changelog:
      • Update to use common/hrb-cellario-util:v1.1.2
  • Task Script

    • namespace: common
    • slug: hrb-cellario-util
    • version: v1.1.2
    • changelog:
      • Allow search for any value for Order.Parameters.Name

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