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2022.4_2 Artifact Release

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RELEASE DATE: 2022-04-12

Bug Fixes

DE-3693 Big Lunatic - Incorrect error message is displayed when the "Plate Position" field value is missing in RAW file; DE-3692 Big Lunatic - Status of the file incorrectly completed when the Plate ID values are missing in RAW file

  • Protocol

    • namespace: common
    • slug: unchained-labs-lunatic-util
    • version: v2.5.1
    • changelog:
      • Update to use task script common/unchained-labs-lunatic-util:v5.0.1

  • Task Script

    • namespace: common
    • slug: unchained-labs-lunatic-util
    • version: v5.0.1
    • changelog:
      • Update Lunatic Protein Concentration parser to report plate position error
DE-3479 Hitachi SEM Pipeline failed

  • Protocol

    • namespace: common
    • slug: hitachi-su5000-sem-raw-to-ids
    • version: v1.0.1
    • changelog:
      • Update to use task script common/hitachi-su5000-sem-raw-to-ids:v1.0.1"

  • Task Script

    • namespace: common
    • slug: hitachi-su5000-sem-raw-to-ids
    • version: v1.0.1
    • changelog:
      • Fix pipeline failed to identify image and txt file from zip file
DE-3161 Zendesk #1553 - Xcalibur pipeline failure - process cannot access file

  • Protocol

    • namespace: common
    • slug: thermofisher-xcalibur-raw-to-ids
    • version: v3.6.0
    • changelog:
      • Update to use task script common/thermofisher-xcalibur-windows:v1.6.0
      • Update to use task script common/thermofisher-xcalibur-raw-to-ids:v6.1.0
      • Add pipeline config variable datetime-formats for suggesting datetime string formats to prefer in ambiguous cases

  • Task Script

    • namespace: common
    • slug: thermofisher-xcalibur-windows
    • version: v1.6.0
    • changelog:
      • Fix disk space not enough error by removing log files
      • Fix "the process can not file error" by only allowing one file to be processed at a time
      • Fix the decimal point bug for "UHV Pressure"
      • Delete all the files in C:\TetraScience\Template\Xcalibur if those files are bigger than 100K on the TDP server

  • Task Script

    • namespace: common
    • slug: thermofisher-xcalibur-raw-json-to-ids
    • version: v6.1.0
    • changelog:
      • Update to use ts-task-script-utils's datetime_parser to parse datetimes
      • Add support for suggesting list of datetime format strings to parse by using the datetime_formats pipeline configuration variable
      • Add support for input files from thermofisher-xcalibur-windows:v1.6.0
      • Fix significant digit errors that erroneously added digits after the decimal which didn't occur in original date set
      • Maintain backwards compatibility with input files from thermofisher-xcalibur-windows:v1.5.0 and older
DE-3120 Zendesk #1544: waters-masslynx pipeline failure - no space left

  • Protocol

    • namespace: common
    • slug: waters-masslynx-raw-to-ids
    • version: v3.1.0
    • changelog:
      • Update to use masslynx-windows：v1.0.2

Enhancements (New Features and Functionality)

DE-3523 Flowcam Update IDS

  • IDS

    • namespace: common
    • slug: flow-imaging-microscopy-yft-flowcam
    • version: v3.0.0
    • changelog:
      • Update to include new fields for software v5 compatibility
        • systems[*] contains serial_number and software[*]
        • samples[*].properties[*] moved to results[*].filter_grid[*].metadata[*].droplet and results[*].filter_grid[*].metadata[*].solids
        • runs[*] contains priming_method, flow_rate, recalibrations, stop_reason, and volume.aspirated
        • runs[*].images contains more detailed image statistics
        • methods[*] contains magnification, calibration_factor, number_of_processors , pump and syringe_size
        • results[*].filter changed to results[*].filter_grid[*]
        • results[*].filter_grid[*] contains volume_abd_percentage, volume_esd_percentage, parts_per_million_abd, parts_per_million_esd, droplet, solids and metadata
        • datacubes[*] contains name
DE-3333 Chemstation - Create new multi-system chemstation IDS

  • IDS

    • namespace: common
    • slug: agilent-chemstation
    • version: v1.0.0
    • changelog:
      • First release.
DE-3311 Beckman Coulter, Vi-Cell BLU - Create RAW to IDS parser

  • Protocol

    • namespace: common
    • slug: beckmancoulter-vicell-blu-raw-to-ids
    • version: v1.0.1
    • changelog:
      • Update to use task script common/beckmancoulter-vicell-blu-raw-to-ids:v1.0.1

  • Task Script

    • namespace: common
    • slug: beckmancoulter-vicell-blu-raw-to-ids
    • version: v1.0.1
    • changelog:
      • Update to process more sample files
DE-3226 Luminex xPONENT (MagPix) IDS

  • IDS

    • namespace: common
    • slug: plate-reader-luminex-xponent
    • version: v1.0.0
    • changelog:
      • First Release

Updated 7 months ago