2022.2_0-1 Artifact Release

RELEASE DATE: 2022-02-03

Bug Fixes

DE-3181 Gen5 RAW JSON to IDS JSON: handle missing Protocol information and out of range falues in the results in the RAW JSON
  • Protocol

    • namespace: common
    • slug: biotek-gen5-raw-json-to-ids
    • version: v1.0.1
    • changelog:
      • Update to use task script common/biotek-gen5-raw-json-to-ids:v1.0.1
  • Task Script

    • namespace: common
    • slug: biotek-gen5-raw-json-to-ids
    • version: v1.0.1
    • changelog:
      • Fix bug to handle missing Protocol information and out of range failures in the results in the RAW JSON
DE-3158 MassLynx pipeline failed at 3rd step with "list index of out range" error
  • Protocol

    • namespace: common
    • slug: waters-masslynx-raw-to-ids
    • version: v2.2.4
    • changelog:
      • Update to use task script common/masslynx-util:v4.0.4
  • Task Script

    • namespace: common
    • slug: masslynx-util
    • version: v4.0.4
    • changelog:
      • Add tolerance for empty/missing/incomplete fields throughout parsing
      • Remove unused functions to decrease parser footprint
DE-2949 Bruker Sierra SPR32 parser errors | DE-3064 Bruker Sierra SPR32 - fix datacubes bug
  • Protocol

    • namespace: common
    • slug: bruker-sierra-spr32-util
    • version: v2.2.3
    • changelog:
      • Update to use task script common/bruker-sierra-spr32-util:v3.0.1
  • Task Script

    • namespace: common
    • slug: bruker-sierra-spr32-util
    • version: v3.0.1
    • changelog:
      • Fix bug where injection parameters were treated as a list when they were not
      • Fix bug where datacubes scale array variable was incorrectly repeated leading to array length mismatch between data values and dimensions

Enhancements (New Features and Functionality)

DE-2715 Proteinsimple Maurice C - Update RAW to IDS Parser
  • Protocol

    • namespace: common
    • slug: proteinsimple-maurice-raw-to-ids
    • version: v1.1.0
    • changelog:
      • Update to use task script common/proteinsimple-maurice-raw-to-ids:v2.0.0
  • Task Script

    • namespace: common
    • slug: proteinsimple-maurice-raw-to-ids
    • version: v2.0.0
    • changelog:
      • Update main.py to support for both of .mbz and .zip files
      • Add process_zip.py to convert zip file
      • Add more sample files from zymeworks and tests
      • Update the script to use the .batch file for the function parse_edit_xml if no edit_xxxx.xml files are found
      • update the parse_edit_xml function to use Separation/Voltage/Step if SampleLoadEK/Voltage/Step is not a valid XML path

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