2021.11_1 Artifact Release Notes

RELEASE DATE: 11 NOVEMBER 2021

Bug Fixes

DE-2686 ThermoFisher XCalibur - Investigate OverflowErrors
  • IDS

    • Slug: common/ms-xcalibur
    • Version: v6.0.0
    • Changes:
      • Add "name", "measures", "dimensions" to required datacubes items
      • Rename generalValueUnit to value_unit_object to use snake case naming
      • Remove unnecessary runs[*].system_specific_field.number_of_spectra.additionalProperties field
      • Remove many fields in required array because they should not be required by convention
  • Task Script

    • Slug: common/thermofisher-xcalibur-raw-json-to-ids
    • Version: v6.0.0
    • Changes:
      • Add fault tolerance for overflowed integers and floats that are meant to represent minimum values for runs[*].time.start and runs[*].time.stop
        • Example: 1e20 minutes (1.9e14 years)
      • Update to refer to IDS ms-xcalibur v6.0.0
      • Remove requirement to have a datacubes object
  • Protocol

    • Slug: common/thermofisher-xcalibur-raw-to-ids
    • Version: v3.4.0
    • Changes:
      • Update to use task script common/thermofisher-xcalibur-raw-json-to-ids version v6.0.0
DE-2702 Chemstation bug fixes
  • Task Script
    • Slug: common/agilent-chemstation-raw-to-raw-json
    • Version: v1.0.1
    • Changes:
      • Fix bugs
    • Slug: common/agilent-chemstation-raw-json-to-ids
    • Version: v1.0.1
    • Changes:
      • Fix bugs
  • Protocol
    • Slug: common/chemstation-agilent-series1200-raw-json-to-ids
    • Version: v1.0.1
    • Changes:
      • Update to use task script common/agilent-chemstation-raw-to-raw-json version v1.0.1
      • Update to use task script common/agilent-chemstation-raw-json-to-ids version v1.0.1
DE-2817 Fix Gen5 Bugs
  • Task Script
    • Slug: common/biotek-gen5-raw-to-ids
    • Version: v1.0.1
    • Changes:
      • Fix issue where parser would fail if the value for the field Experiment File Path was blank
      • Fix issue where multiple nested keys in protocol cause parser failure
      • Datacubes with all null measures[*].value trigger a logged warning and are no longer included in output IDS
  • Protocol
    • Slug: common/biotek-gen5-raw-to-ids
    • Version: v1.0.1
    • Changes:
      • Update to use task script common/biotek-gen5-raw-to-ids version v1.0.1

Enhancements (New Features and Functionality)

DE-2322 Bio-Rad Gel Doc XR+ - Create IDS
  • IDS
    • Slug: common/gel-imager-bio-rad-gel-doc-xr
    • Version: v1.0.0
    • Changes:
      • First release

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